Identifier Data Sources

You can load MODs ids into your mine using identifier data sources.

Types of data loaded

genes

How to download the data

flybase-identifiers

http://flybase.org/downloads/archivedata - you can download different versions

zfin-identifiers

http://zfin.org/downloads/ensembl_1_to_1.txt

sgd-identifiers

http://downloads.yeastgenome.org/curation/chromosomal_feature/SGD_features.tab

wormbase-identifiers

query wormbase biomart webservice

mgi-identifiers

ftp://ftp.informatics.jax.org/pub/reports/MGI_Coordinate.rpt

rgd-identifiers

ftp://rgd.mcw.edu/pub/data_release/GENES_RAT.txt

How to load the data into your mine

project XML example

 <source name="flybase-identifiers" type="flybase-identifiers">
   <property name="src.data.dir" location="/DATA/flybase-identifiers"/>
 </source>

 <source name="zfin-identifiers" type="zfin-identifiers">
   <property name="src.data.dir" location="/DATA/zfin-identifiers"/>
 </source>

 <source name="sgd-identifiers" type="sgd-identifiers">
   <property name="src.data.dir" location="/DATA/sgd-identifiers"/>
 </source>

 <source name="wormbase-identifiers" type="wormbase-identifiers">
   <property name="src.data.dir" location="/DATA/worm-identifiers"/>
 </source>

<source name="mgi-identifiers" type="mgi-identifiers">
   <property name="src.data.dir" location="/DATA/mgi-identifiers"/>
 </source>

<source name="rgd-identifiers" type="rgd-identifiers">
   <property name="src.data.dir" location="/DATA/rgd-identifiers"/>
 </source>