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Certain features of the BlueGenes app are controlled by parameters set in the web.properties file. These properties are also used in the current webapp user interface.
purpose | parameters | example |
---|---|---|
default examples for the ID resolver | bag.example.identifiers | bag.example.identifiers.protein=Q8T3M3,FBpp0081318,FTZ_DROME and bag.example.identifiers=CG9151, FBgn0000099 (one per type) |
default separators | list.upload.delimiters | \n\t, |
default regionsearch | genomicRegionSearch.* | H. sapiens (note: please do not use long format, e.g. Homo sapiens ) |
default query builder query | services.defaults.query | "{ \"from\": \"Gene\", \"select\": [ \"secondaryIdentifier\", \"symbol\", \"primaryIdentifier\", \"organism.name\" ], \"orderBy\": [ { \"path\": \"secondaryIdentifier\", \"direction\": \"ASC\" } ], \"where\": [ { \"path\": \"organism.name\", \"op\": \"=\", \"value\": \"Drosophila melanogaster\", \"code\": \"A\" } ] }" |
default keyword search | quickSearch.identifiers | e.g. PPARG, Insulin, rs876498 |
Please see Features for details on these parameters.