InterMine documentation¶
InterMine is an open source data warehouse built specifically for the integration and analysis of complex biological data.
Developed by the Micklem lab at the University of Cambridge, InterMine enables the creation of biological databases accessed by sophisticated web query tools. Parsers are provided for integrating data from many common biological data sources and formats, and there is a framework for adding your own data. InterMine includes an attractive, user-friendly web interface that works ‘out of the box’ and can be easily customised for your specific needs, as well as a powerful, scriptable web-service API to allow programmatic access to your data.
Contents¶
- System Requirements
- Get started
- InterMine
- Data Model
- Database
- Guide to Customising your Web Application
- Guide to Customising BlueGenes
- Home page
- Report page
- Lists
- Template Queries
- Query Results
- QueryBuilder
- Keyword Search
- General Layout
- Region Search
- Customise Web Application
- Data Categories
- Web pages markup
- Help
- Linking in to your mine
- Third party tools
- Monitoring Site Usage
- Website Admin
- User Accounts
- Performance
- Diagnostic
- Building Javadoc
- Permanent URLs
- Customising the default queries in your io-docs application
- Overwrite any JSP
- Web Services
- Embedding InterMine components
- InterMine API Description
- Support
- About Us
- InterMine Video Tutorial Collection